Oxford Nanopore dataset for molecular macrobenthos biodiversity monitoring comparing Oxford Nanopore and Illumina based metabarcoding and metagenomics
Citable as data publication
Doorenspleet, K.; Mailli, A.A.; van der Hoorn, B.; Beentjes, K.; De Backer, A.; Derycke, S.; Murk, A.; Reiss, H.; Nijland, R.; Wageningen University and Research; Nord University; Naturalis Biodiversity Center; ILVO Marine Research; (2024): Oxford Nanopore dataset for molecular macrobenthos biodiversity monitoring comparing Oxford Nanopore and Illumina based metabarcoding and metagenomics. Marine Data Archive. https://doi.org/10.14284/683
Contact:
Doorenspleet, Karlijn ;
Mailli, Amalia Availability:
 This dataset is licensed under a Creative Commons Attribution 4.0 International License.Description
The Oxford Nanopore metabarcoding dataset for the manuscript: Advancing molecular macrobenthos biodiversity monitoring: a comparison between Oxford Nanopore and Illumina based metabarcoding and metagenomics. more
For this manuscript 3 datasets are available that all analyze 12 Bulk samples of macrobenthos from the Belgian North Sea. These samples were used: 1. For NovaSeq shotgun metagenomics 2. For Nanopore metabarc oding of amplicons from a COI region 3. For Illumina MiSeq metabarcoding of amplicons from the exact same COI region. This is the data for from the Oxford Nanopore run. Scope Themes: Biology > Benthos > Macrobenthos, Biology > Ecology - biodiversity Keywords: Marine/Coastal, DNA, Illumina sequencing, Metabarcoding, Metagenomics, Nanopore sequencing, ANE, Belgium Geographical coverage ANE, Belgium [Marine Regions] Temporal coverage
October 2017 Parameters
Count Species composition Species richness Contributors
Wageningen University and Research Centre; Marine Animal Ecology, more, data creator
Nord University; Faculty of Biosciences and Aquaculture, more, data creator
Naturalis Biodiversity Center (NBC), more, data creator
Instituut voor Landbouw-, Visserij- en Voedingsonderzoek (ILVO), more, data creator
Related datasets
Other relations: Illumina MiSeq dataset for molecular macrobenthos biodiversity monitoring comparing Oxford Nanopore and Illumina based metabarcoding and metagenomics, more Illumina Novaseq dataset for molecular macrobenthos biodiversity monitoring comparing Oxford Nanopore and Illumina based metabarcoding and metagenomics, more Dataset status: Completed
Data type: Data
Data origin: Research: lab experiment
Metadatarecord created: 2024-09-26
Information last updated: 2024-09-26
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