PPDB: Plankton-specific protein sequence database
Citable as data publication
Gutierrez, J.; Hablützel, P.I.; Flanders Marine Institute: Belgium; (2022): Plankton-specific protein sequence database. Marine Data Archive. https://doi.org/10.14284/573
Contact:
Hablützel, Pascal ;
Gutierrez, Jayson Availability:
 This dataset is licensed under a Creative Commons Attribution 4.0 International License.Description
Plankton-specific protein sequence database suitable for profiling environmental metagenomic/metatranscriptomic samples more
Each entry in this fasta file corresponds to a predicted protein sequence for prokaryotic/eukaryotic species. Sequences (2867766) have been taxonomically affiliated (NCBI taxID) and annotated against the UniRef90 database of protein families (clusters). Scope Themes: Biology > Plankton Keywords: Eukaryota, Functional profiling, Metagenomics, Metatranscriptomics, Plankton, Prokaryotae, Protein sequences, World Oceans Geographical coverage World Oceans [Marine Regions] Temporal coverage
From 20 July 2022 on [Completed] Not relevant Parameter
Total number of sequences in database Contributors
Vlaams Instituut voor de Zee (VLIZ), more, data creator
Publication
Describing this dataset
Gutiérrez, J.; Hablützel, P. (2022). A system-level view on the function of natural eukaryotic biomes through taxonomically resolved metabolic pathway profiling. bioRxiv Preprint: 1-23. https://dx.doi.org/10.1101/2022.07.27.501711, more
Dataset status: Completed
Data type: Data
Data origin: Data collection
Metadatarecord created: 2022-08-02
Information last updated: 2022-08-22
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